StagtheStalker wrote:
I have this idea of a world where somewhere in the timeline Nanotechnology was so able to alter our evolution that it resulted in a large number of different human sub-species. With each one being able to sexually reproduce themselves. Each sub-species would essentially be Homo Sapien but each would also possess it's own unique genetic and physical traits.
Sub-species are already able to sexually reproduce themselves. And depending on what criteria you use there are already large numbers of different human sub-species (races*).
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I have no idea if nanotechnology could be used in that way and if it would ever be possible for us to understand the process of evolution well enough to use nanotechnology in such a way.
I think the term genetic manipulation/modification would be better then evolution since it seems that is what you are proposing as of one the central elements of your setting. So the question would be if would be possible the working of genetics would get to such a point where such large scale and intensive changing of a subjects genetic make up is possible. Unfortunately I do not know enough to make an educated guess about it.
So I agree with starkid that you need to decide how it would affect DNA and what the consequences of such technology and underlying theories would be.
*Or if you prefer the more pc-term of population groups.